Studenten-Seminar Sommersemester 09:
Analyse und Modellierung komplexer Systeme

Dozenten:

• PD Dr. J. Berg
• Dr. H. Busch
• Dr. B.Schelter
• Prof. Dr. J. Timmer

Zeit und Ort: Dienstag, 17:15, Semianrraum Westbau

Beginn: 28. 04. 2009

Anmeldung und Themenwunsch per e-mail

Teilnehmer:

• Benjamin Berger
• Achim Kimmerle
• Lorenz Heidinger
• Rüdiger Trojok
• Simon Fuchs
• Johannes Eckert

Vorbesprechung: Dienstag 28. 04. 2009, 17:15 Uhr, Seminarraum Westbau

• 28. 04. 2009

  Vorbesprechung, Themenvergabe

• 19. 05. 2008
  • Vortragender: Simon Fuchs
  • Thema: Entropie & Biologie I
  • Literatur:
    • C. Adami: Information Theory in Molecular Biology
    • T. Schneider: Sequence Logos, Machine/Channel Capacity, Maxwell's Demon, and Molecular Computers
  • Betreuer: Hauke Busch
• 26. 05. 2008
  • Vortragender: Rüdiger Trojok
  • Thema: Entropie & Biologie II
  • Literatur:
    • G. Tkacik, C.G. Callan, W. Bialek. Information flow and optimization in transcriptional regulation
  • Betreuer: Hauke Busch
• 09. 06. 2008
  • Vortragender: Lorenz Heidinger
  • Thema: Reconstructing the tree of life - statistical models in sequence alignment
  • Literatur:
    • N. Rappoport. Introduction to Computational Biology - Sequences Alignment part A
    • N. Rappoport. Introduction to Computational Biology - Sequences Alignment part B
  • Betreuer: Johannes Berg
• 23. 06. 2008
  • Vortragender: Johannes Eckert
  • Thema: Spatiotemporal modeling of tumor growth
  • Literatur:
    • H. Byrne and D. Drasdo Individual-based and continuum models of growing cell populations: a comparison. J Math Biol 58, 657 (2009)
  • Betreuer: Hauke Bausch
• 30. 06. 2008
  • Vortragender: Benjamin Berger
  • Thema: Granger Causality
  • Literatur:
    • C.W.J. Granger: Investigating Causal Relations by Econometric Models and Cross-spectral Methods. Econometrica. 37, Nr. 3, 1969, S. 424 - 438. Manuscript
  • Betreuer: Björn Schelter
• 07. 07. 2008
  • Vortragender: Achim Kimmerle
  • Thema: Analysing complex systems out of equilibrium: RNA folding and the Jarzynski equality
  • Literatur:
    • J. Liphardt et al. Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski's Equality. Science 296, 1832-1835 (2002)
    • Crooks, G. E.Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences. Phys. Rev. E 60 (1999)
    • Jarzynski, C. Nonequilibrium Equality for Free Energy Differences. Phys. Rev. Lett. 78 (1997)
  • Betreuer: Johannes Berg