Papers cited more than 1000 times, according to the Web of Science:

• A. Raue, C. Kreutz, T. Maiwald, J. Bachmann, M. Schilling, U. Klingmüller, J. Timmer.
  Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics 25, 2009, 1923-1929
  Supplementary Information

• Timmer J., König, M.
  On generating power law noise. Astronomy and Astrophysics, 300, 1995, 707-710

Papers cited more than 500 times:

• Sick S., Reinker S., Timmer J., Schlake T.
  WNT and DKK determine hair follicle spacing through a reaction-diffusion mechanism. Science 314, 2006, 1447-1450
  Supplementary Information
  Science Perspective
  Preview in Cell

• E. Anastasiou, S. Kenz, M. Gerstung, D. MacLean, J. Timmer, C. Fleck, M. Lenhard.
  Control of plant organ size by KLUH/CYP78A5-dependent intracellular signalling. Developmental Cell 13, 2007, 843-856

• F.G. Wieland, A.L. Hauber, C. Tönsing, M. Rosenblatt, J. Timmer.
  On structural and practical identifiability. Current Opinion in Systems Biology 25, 2021, 60-69
• Swameye I., Müller T.G., Timmer J., Sandra O., Klingmüller U.
  Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by data-based modeling. Proc. Natl. Acad. Sci. 100, 2003, 1028-1033
  Supplementary Information
  Data analyzed in the paper

• Kollmann M., Bartholome K., Lovdok L., Timmer J., Sourjik V.
  Design principles of a bacterial signalling network. Nature 438, 2005, 504-507
  Supplementary Information

• Schelter B., Winterhalder M., Eichler M., Peifer M., Hellwig B., Guschlbauer B., Lücking C.H., Dahlhaus R., Timmer J.
  Testing for directed influences among neural signals using partial directed coherence. Journal of Neuroscience Methods 152, 2006, 210-219

• A. Raue, M. Schilling, J. Bachmann, A. Matteson, M. Schelker, D. Kaschek, S. Hug, C. Kreutz, B.D. Harms, F.J. Theis, U. Klingmuller, J. Timmer.
  Lessons learned from quantitative dynamical modeling in systems biology. PLoS ONE 8, 2013, e74335

• Voss H.U., Timmer J., Kurths J.
  Nonlinear dynamical system identification from uncertain and incomplete measurements. Int. J. Bif. Chaos 14, 2004, 1905-1933

• Maiwald T., Winterhalder M., Aschenbrenner-Scheibe R., Voss H.U., Schulze-Bonhage A., Timmer J.
  Comparison of three nonlinear seizure prediction methods by means of the seizure prediction characteristic. Physica D 194, 2004, 357-368

• Pfeifer D., Pantic M., Skatulla I., Rawluk J., Kreutz C., Martens U., Fisch P., Timmer J., Veelken H.
  Genome-wide analysis of DNA copy number changes in CLL using high-density SNP arrays. Blood 109, 2007, 1202-1210

• G. Deuschl, P. Krack, M. Lauk, J. Timmer
  Clinical neurophysiology of tremor. Journal of Clinical Neurophysiology 13, 1996, 110-121

• Winterhalder M., Maiwald T., Aschenbrenner-Schiebe R., Voss H.U., Timmer J., Schulze-Bonhage A.
  The seizure prediction characteristic: A general framework to assess and compare seizure prediction methods. Epilepsy and Behavior 4, 2003, 318-325

• T. Maiwald, J. Timmer
  Dynamical modeling and multi-experiment fitting with PottersWheel. Bioinformatics 24, 2008, 2037-2043
  Supplementary Information

• Maraun D., Rust H., and Timmer, J.
  Tempting long-memory - on the interpretation of DFA results. Nonlinear Processes in Geophysics 11, 2004, 495-503

• Winterhalder M., Schelter B., Hesse W., Schwab K., Leistritz L., Klan D., Bauer R., Timmer J., Witte H.
  Comparison of linear signal processing techniques to infer directed interactions in multivariate neural systems. Signal Processing 85, 2005, 2137-2160

• N. Borisov, E. Aksamitiene, A. Kiyatkin, S. Legewie, J. Berkhout, T. Maiwald, N.P. Kaimachnikov, J. Timmer, J.B. Hoek, B.N. Kholodenko.
  Systems-level interactions between insulin-EGF networks amplify mitogenic signaling. Mol. Sys. Bio. 5, 2009, 256

• Kristeva-Feige R., Fritsch Ch., Timmer J., Lücking C.H.
  Influence of distraction of attention and precision level of exerted force on beta range EEG-EMG synchronization during maintainted motor contraction task. Clin. Neurophys. 113, 2002, 124-131

• M. Buchner, S. Fuchs, G. Prinz, D. Pfeifer, K. Bartholome, M. Burger, N. Chevalier, L. Vallat, J. Timmer, J.G. Gribben, H. Jumaa, H. Veelken, C. Dierks, K. Zirlik.
  Spleen Tyrosine Kinase (SYK) is overexpressed and represents a potential therapeutic target in chronic lymphocytic leukemia. Cancer Research 69, 2009, 5424-5432

• B. Schelter, J. Timmer, M. Eichler.
  Assessing the strength of directed influences among neural signals using renormalized partial directed coherence. J. Neuroscience Methods 179, 2009, 121-130

• Kreutz C., Timmer J.
  Systems biology: experimental design. FEBS Journal 276, 2009, 923-942

• D. Saur, B. Schelter, S. Schnell, D. Kratochvil, H. Küpper, P. Kellmeyer, D. Kümmerer, S. Klöppel, V. Glauche, R. Lange, W. Mader, D. Feess, J. Timmer, C. Weiller.
  Combining functional and anatomical connectivity reveals brain networks for auditory language comprehension. Neuroimage 49, 2010, 3187-3197

• Hellwig B., Häußler S., Schelter B., Lauk M., Guschlbauer B., Timmer J., Lücking C.H.
  Tremor-correlated cortical activity in essential tremor. The Lancet 357, 2001, 519-523

• Aschenbrenner-Schiebe R., Maiwald T., Winterhalder M., Voss H.U., Timmer J., Schulze-Bonhage A.
  How well can epileptic seizures be predicted? An evaluation of a nonlinear method. Brain 216, 2003, 2616-2626

• Schelter, B., Winterhalder M., Maiwald T., Brandt A., Schad A., Schulze-Bonhage A., Timmer J.
  Testing statistical significance of multivariate time series methods for epileptic seizure prediction. Chaos 16, 2006, 013108

• Klingmüller U., Bauer A., Bohl S., Nickel P., Breitkopf K., Dooley S., Zellmer S., Kern C., Merfort I, Sparna T., Donauer J., Walz G., Geyer M., Kreutz C., Hermes M., Götschel F., Hecht A., Walter D., Egger L., Neubert K., Borner C., Brulport M., Schormann W., Sauer C., Baumann F., Preiss R., MacNelly S., Godoy P., Wiercinska E., Ciuclan L., Edelmann J., Kleemann W.J., Zeilinger K., Heinrich M., Zanger U.M., Reuss M., Bader A., Gebhardt R., Maiwald T., Timmer J., von Weizsäcker F., Hengstler J.G.
  Primary mouse hepatocytes for systems biology approaches: a standardized in vitro system for modelling of signal transduction pathways. IEE Proc. Systems Biology 153, 2006, 433-447

• Reinhard, M., Roth, M., Müller, T., Czosnyka, M., Timmer, J., Hetzel, A.
  Cerebral autoregulation in carotid artery occlusive disease assessed from spontaneous blood pressure fluctuations by the correlation coefficient index. Stroke 34, 2003, 2138-2244

• V. Becker, M. Schilling, J. Bachmann, U. Baumann, A. Raue, T. Maiwald, J. Timmer, U. Klingmüller.
  Covering a broad dynamic range: Information processing at the erythropoietin receptor. Science 328, 2010, 1404-1408
  Supplementary Information
  Data and models of the paper

• Hengl S., Kreutz C., Timmer J. Maiwald T.
  Data-based identifiability analysis of nonlinear dynamical models. Bioinformatics 23, 2007, 2612-2618
  Supplementary Information

• K. Wester, S. Digiuni, F. Geier, J. Timmer, C. Fleck, M. Hülskamp.
  Functional diversity of R3 single-repeat genes in trichome development. Development 136, 2009, 1487-1496

• K. Müller, R. Engesser, S. Metzger, S. Schulz, M.M. Kämpf, M. Busacker, T. Steinberg, P. Tomakidi, M. Ehrbar, F. Nagy, J. Timmer, M.D. Zurbriggen, W. Weber.
  A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells. Nucleic Acids Research 41, 2013, e77

• Reinhard M., Roth M., Guschlbauer B., Harloff A., Timmer J., Czosnyka M., Hetzel A.
  Dynamic cerebral autoregulation in acute ischemic stroke assessed from spontaneous blood pressure fluctuations. Stroke 36, 2005, 1684-1689

• T. Goldmann, N. Zeller, J. Raasch, K. Kierdorf, K. Frenzel, L. Ketscher, A. Basters, O. Staszewski, S.M. Brendecke, A. Spiess, T.L. Tay, C. Kreutz, J. Timmer, G.M. Mancini, T. Blank, G. Fritz, K. Biber, R. Lang, D. Malo, D. Merkler, M. Heikenwälder, K.P. Knobeloch, M. Prinz.
  USP18 lack in microglia causes destructive interferonopathy of the mouse brain. EMBO Journal 34, 2015, 1612-1629
  See also here

• Schelter B., Winterhalder M. Kurths J., Dahlhaus R., Timmer J.
  Partial-phase synchronization for multivariate synchronizing systems. Phys. Rev. Lett. 96, 2006, 208103

• Timmer J., Häußler S., Lauk M., Lücking C.H.
  Pathological tremors: Deterministic chaos or nonlinear stochastic oscillators ? Chaos 10, 2000, 278-288
  Data analyzed in this paper

• J. Rausenberger, A. Tscheuschler, W. Nordmeier, F. Wüst, J. Timmer, E. Schäfer, Ch. Fleck, A. Hiltbrunner.
  Photoconversion and nuclear trafficking cycles determine phytochrome A's response profile to far-red light. Cell 146, 2011, 813-825
  Supplementary Information

• K. Müller, R. Engesser, S. Schulz, T. Steinberg, P. Tomakidi, C.C. Weber, R. Ulm, J. Timmer, M.D. Zurbriggen, W. Weber.
  Multi-chromatic control of mammalian gene expression and signaling. Nucleic Acids Research 41, 2013, e124

• Reinhard M., Roth M., Guschlbauer B., Harloff A., Timmer J., Czosnyka M., Hetzel A.
  Dynamic cerebral autoregulation in acute ischemic stroke assessed from spontaneous blood pressure fluctuations. Stroke 36, 2005, 1684-1689

• A. Raue, B. Steiert, M. Schelker, C. Kreutz, T. Maiwald, H. Hass, J. Vanlier, C. Tönsing, L. Adlung, R. Engesser, W. Mader, T. Heinemann, J. Hasenauer, M. Schilling, T. Höfer, E. Klipp, F. Theis, U. Klingmüller, B. Schöberl, J. Timmer.
  Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. Bioinformatics 31, 2015, 3558-3560
  Supplementary Information I
  Supplementary Information II
  Supplementary Information III

• A. Raue, C. Kreutz, T. Maiwald, U. Klingmüller, J. Timmer.
  Addressing Parameter identifiability by model-based experimentation. IET Systems Biology 5, 2011, 120-130

• D. Bouyer, F. Geier, F. Kragler, A. Schnittger, M. Pesch, K. Wester, R. Balkunde, J. Timmer, C. Fleck, M. Hülskamp.
  Two-dimensional patterning by a trapping/depletion mechanism: The role of TTG1 and GL3 in Arabidopsis trichome formation. PloS Biology 6, 2008, e141

• J. Klatt, H. Feldwisch-Drentrup, M. Ihle, V. Navarro, M. Neufang, C. Teixeira, C. Adam, M. Valderrama, C. Alvarado-Rojas, A. Witon, M. Le Van Quyen, F. Sales, A. Dourado, J. Timmer, A. Schulze-Bonhage, B. Schelter.
  The EPILEPSIAE database: An extensive EEG database of epilepsy patients. Epilepsia 9, 2012, 1669-1676

• Reinhard M., Wehrle-Wieland E., Grabiak D., Roth M., Guschlbauer B., Timmer J., Weiller C., Hetzel A.
  Oscillatory cerebral hemodynamics - the macro- vs. microvascular level. J. Neurol. Sci. 250, 2006, 103-109

• F.G. Wieland, A.L. Hauber, C. Tönsing, M. Rosenblatt, J. Timmer.
  On structural and practical identifiability. Current Opinion in Systems Biology 25, 2021, 60-69

• Timmer, J., Gantert, C., Deuschl, G., Honerkamp, J.
  Characteristics of Hand Tremor Time Series, Biol. Cybern. 70, 1993, 75-80